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ribonucleic acid/arabidopsis thaliana

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A multistep screening method to identify genes using evolutionary transcriptome of plants.

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We introduced a multistep screening method to identify the genes in plants using microarrays and ribonucleic acid (RNA)-seq transcriptome data. Our method describes the process for identifying genes using the salt-tolerance response pathways of the potato (Solanum tuberosum) plant. Gene expression

RNA-directed DNA methylation requires stepwise binding of silencing factors to long non-coding RNA.

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Ribonucleic acid-mediated transcriptional gene silencing (known as RNA-directed DNA methylation, or RdDM, in Arabidopsis thaliana) is important for influencing gene expression and the inhibition of transposons by the deposition of repressive chromatin marks such as histone modifications and DNA

Isolation of Plant Root Nuclei for Single Cell RNA Sequencing

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The characterization of the transcriptional similarities and differences existing between plant cells and cell types is important to better understand the biology of each cell composing the plant, to reveal new molecular mechanisms controlling gene activity, and to ultimately implement meaningful

Molecular recognition of pre-tRNA by Arabidopsis protein-only Ribonuclease P.

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Protein-only ribonuclease P (PRORP) is an enzyme responsible for catalyzing the 5' end maturation of precursor transfer ribonucleic acids (pre-tRNAs) encoded by various cellular compartments in many eukaryotes. PRORPs from plants act as single-subunit enzymes and have been used as a model system for

Splice2Deep: An ensemble of deep convolutional neural networks for improved splice site prediction in genomic DNA

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Background: The accurate identification of the exon/intron boundaries is critical for the correct annotation of genes with multiple exons. Donor and acceptor splice sites (SS) demarcate these boundaries. Therefore, deriving accurate
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